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New Contig Creation Algorithm for the de novo DNA Assembly Problem
(Brock University, 2014-02-25)
DNA assembly is among the most fundamental and difficult problems in
bioinformatics. Near optimal assembly solutions are available for bacterial
and small genomes, however assembling large and complex genomes especially
the ...
Properties and Algorithms of the KCube Graphs
(Brock University, 2014-03-24)
The KCube interconnection topology was rst introduced in 2010. The KCube graph
is a compound graph of a Kautz digraph and hypercubes. Compared with the at-
tractive Kautz digraph and well known hypercube graph, the KCube ...
A Study of Ordered Gene Problems Featuring DNA Error Correction and DNA Fragment Assembly with a Variety of Heuristics, Genetic Algorithm Variations, and Dynamic Representations
(Brock University, 2014-08-18)
Ordered gene problems are a very common classification of optimization problems.
Because of their popularity countless algorithms have been developed in an attempt
to find high quality solutions to the problems. It is ...
Real-Time Automatic Object Classification and Tracking using Genetic Programming and NVIDIA R CUDA TM
(Brock University, 2014-08-01)
Genetic Programming (GP) is a widely used methodology for solving various computational problems. GP's problem solving ability is usually hindered by its long execution times. In this thesis, GP is applied toward real-time ...
Network Similarity Measures and Automatic Construction of Graph Models using Genetic Programming
(Brock University, 2014-09-05)
A complex network is an abstract representation of an intricate system of interrelated elements where the patterns of connection hold significant meaning. One particular complex network is a social network whereby the ...
L-Fuzzy Relations in Coq
(Brock University, 2014-09-05)
Heyting categories, a variant of Dedekind categories, and Arrow categories provide a
convenient framework for expressing and reasoning about fuzzy relations and programs
based on those methods. In this thesis we present ...
Modeling Metal Protein Complexes from Experimental Extended X-ray Absorption Fine Structure using Computational Intelligence
(Brock University, 2014-10-30)
Experimental Extended X-ray Absorption Fine Structure (EXAFS) spectra carry
information about the chemical structure of metal protein complexes. However, pre-
dicting the structure of such complexes from EXAFS spectra ...
Disease-Gene Association Using a Genetic Algorithm
(Brock University, 2014-10-09)
Understanding the relationship between genetic diseases and the genes associated with them is an important problem regarding human health. The vast amount of data created from a large number of high-throughput experiments ...